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The three most prominent splits found with SplitsTree (Fig. 10) are also the strongest mutually compatible ones in the corresponding split support spectrum (Fig. 11).
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In the corresponding split-TEV assay, the Bad/14-3-3 Bad/14-3-3 Bad/14-3-3as readout for the actinteraction of Akt-1.
The domain architecture of the fusion linked protein identified in Phytophthora infestans corresponds to the domain architecture of the corresponding split protein pair in the T. brucei proteome.
The domain architecture of the fusion linked protein identified in Entamoeba histolytica corresponds to the domain architecture of the corresponding split protein pair in the T. brucei proteome.
The domain architecture of the fusion linked protein identified in Monosiga brevicolis corresponds to the domain architecture of the corresponding split protein pair in the T. brucei proteome.
The domain architecture of the fusion linked proteins identified in Chlamydomonas reinhardtii correspond to the domain architecture of the corresponding split proteins pair in the T. brucei proteome.
The relative frequency with which a chosen branch appears, its bootstrapping frequency, is then taken as a measure of the confidence one can have in this branch – or, more precisely, in the phylogenetic relevance of the corresponding split of the underlying sequence set induced by this branch.
Since each edge in a tree corresponds to a split, a tree on taxon set X is identified by the corresponding split set (see example in Figure 1, note that the taxon sets in a split can be shortly written as a string of concatenated taxa).
In addition, "Wei" denotes the average weight of the corresponding split over 100 runs; "BV" denote bootstrap value.
The resulting SH-like P-values therefore indicate the probability that the corresponding split is significant.
The average length of a retained edge is computed using the subsample where the corresponding split does occur, thereby neglecting a fraction of the posterior mass, but also the context in which the split occurs.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com