To the best of our knowledge this is the first study that incorporates quality value information and k-mers counts, in the context of alignment-free measures, for the comparison of reads data.
The coordinate transformations necessary to visualize annotations in the context of alignments are implemented implicitly in programs that deal with the analysis and visualization of alignments, such as Mauve, tools in the VISTA suite (Frazer et al., 2004), or others.
And such error causes severe interference, especially in the context of signal alignment transmissions, where the incompletely removed self-interference, an unique phenomenon for signal alignment, will severely degrade the transmission reliability.
Experiments demonstrate that applying PSO in the context of ontology alignment is a feasible approach.
RIC is used in the context
Circular strings have previously been studied in the context of sequence alignment.
For example, it may be useful for inspecting their proteins of interest in the context of the alignment of their evolutionary families, secondary structure, solvent accessibility states and the likelihood of implied residue residue interactions (as computed by QMEAN).
The differing length-dependent dispersions of Λ for coding and non-coding regions suggest that a better classification rule could be obtained by interpreting the log-likelihood ratio for each example in the context of the alignment's length.
Tree-decomposition-based algorithms have been successfully applied in the area of computational biology, for instance, in the context of structure sequence alignment [ 17].
An sci close to 1 indicates perfect structure conservation, while alignments without structural conservation yield values close to 0. A more detailed discussion of the sci can be found in [ 16] in the context of RNA alignment.
