In general, EST specific alignments resulted in more positive RNAz predictions and the most structural RNA elements were predicted from both alignment sets [see Additional file 1, Figure S2].
In particular geometry of (4 4 1) and (1 1 4) resonators are optimized for specific alignments of the cantilever.
In the proposed model of specific alignment of bands in rutile and anatase shown in Fig. 5b, the electrons are injected from rutile to anatase participating in more active oxidation reaction at the anatase grain surface.
The GI tract consists of multiple cell types arranged in a specific alignment and location.
Moreover, trimAl can automatically select the parameters to be used in each specific alignment so that the signal-to-noise ratio is optimized.
The entropy approach [ 24], which measures the uncertainty at each position relative to other positions in a specific alignment, was used to assess the variability along the ORF5 and ORF7 sequences.
In addition to the full protein alignments, we built a separate alignment for PDZ domains (as in ref [ 2] but with an extended gene sampling) and constructed specific alignments for the SAM and SH3 domains of Shank.
Locus specific alignments were created using Clustal W [ 31] as implemented in MEGA 5.0 [ 32].
Systematic error in inference of allelic imbalance can arise from asymmetry in genetic differences between reads and references used in alignments or differences between references in ambiguity (e.g., CNVs), in combination with the specific alignment algorithm used [ 35, 51].
Cytotoxicity test showed very good survival and proliferation of cells on cryogels, while the electrical stimulation triggered changes in cell morphology as well as a specific alignment of cells in parallel to the electrical field.
For reads longer than 1024bp, we would explore some specific alignment tools in future, such as BWA-SW [ 37].
