Sentence examples similar to in setting the background from inspiring English sources
Mock-infected HeLa cells and DMD myoblasts processed in parallel served to set the background levels of each assay.
Incidentally many research group including ours are actively working in this direction as put forth briefly in the following paragraph to set the background of the present investigation.
In our data sets the background fluorescence varied significantly throughout each microarray, but there was a clear coincidence between the green and red fluorescence channel (Figure 1).
In this study, we set the background width ω to be 151 bp.
The first stage of this system deals with setting the background in the scene which is similar to all other BGS techniques.
The control slides (no IgM, but with FITC conjugated goat anti-human IgM antibody) were used for setting the background, in which no fluorescence signal was detectable.
For each of the spike-in data sets, the background noise was estimated using the Bioconductor implementation of RMA background correction [ 4].
For calculating p-values, the GO terms had to meet two criteria: the number of genes associated with the GO term in the gene set is greater than one, and the proportion of genes with the GO term is greater in the gene set than in the background set.
Given a target set and a background set of genes, PRIMA performs statistical tests to identify TFs whose binding site (BS) signatures are significantly more prevalent in the promoters of the target set than in the background set.
Defining significant genes as those whose gene-wise P values were less than 0.05, we computed the proportion of significant genes in the module gene set and the background set for each of the three input datasets.
