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Motivated by this work, we considered the problem of predicting expression levels using probes that are similar in sequence to a given TAR but not within that TAR.
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′, where ∑ denotes an alphabet of possible states, such as amino acids in the strain sequence corresponding to a given position in the multiple alignment.
These data demonstrate that even small differences between paired α and β chain sequences generated naturally in response to a given antigen can dramatically influence the physical and functional properties of the resultant TCR.
A subset of genome fragments closest in composition to a given query sequence are thus identified at the end of this step.
These binding probabilities are summed over all positions in a sequence to give an estimate on the total binding affinity of the TF for a putative promoter.
To avoid this problem, we may identify a particular coding region in nucleotide sequences that corresponds to a given functional domain of an enzyme such as lipase.
Therefore, as shown in the decision flowchart in Figure 3, in order to consider a given sequence as a potential candidate that processes the putative reactions, a preliminary requirement has been introduced in the decision chart so that the enzyme should exhibit promiscuous activity based on the estimations performed by a molecular signature-based predictor (see Methods).
A careful examination of the analysis procedure reveals that the meta-rna program needs to analyze every individual sequence in a given metagenomic data set to identify rDNA fragments.
In the present instance, FASSM algorithm and coverage analysis based on FASSM scoring is used to assess the ability of a sequence in a given protein family to generate the best-representative PSSM profiles.
Identifying individual SNPs of interest usually requires mapping all sequencing reads in a fastq file to a given reference genome, despite the fact that only a few nucleotide positions might be relevant.
This program searches for those small RNAs present in the sequencing reads that can be mapped to a given reference sequence.
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