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By comparing the overall call rate determined under the 95% QC criteria with that under the default criteria, 187 of 189 samples improved by an average of 0.018% in overall call rate; however, the remaining two samples showed decreased overall call rate (by 0.76% and 0.12%).
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Accompanying an increase in the reliability of each call, however, is a reduction in the overall call rate.
{h}: Set of hypotheses relevant to the query compound and which have been used in the overall call.
The final overall prediction provides the following set of information: classx: predicted class standard confidencex: normalised confidence level for the prediction {h}: Set of hypotheses relevant to the query compound and which have been used in the overall call.
The overall call rate in the 13 assays, after merging, amounts to 95% (58 undetermined results out of 1118 tests).
All SNPs in the present analysis had overall call rates >95%.
Finally, 658,288 SNPs in 1,452 subjects with an overall call rate of 99.68% were used for further analysis.
> -wrap-foot> After quality control (QC), all genotyped SNPs in the present analysis had overall call rates >95% and duplicate and HapMap sample concordance >98%.
After completing thousands of 10K GeneChip® assays it is clear that even in samples with the highest overall call rates there are some SNPs consistently called less than other SNPs.
Using playback experiments, we previously showed that bucks attend to changes in conspecific call rate and overall call structure, thus gaining information on the motivation and condition (fatigue) of competitors [ 37].
The overall call rates were in the range from 99.7 100%.
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CEO of Professional Science Editing for Scientists @ prosciediting.com