Sentence examples for in our seq from inspiring English sources

However, a single mutation is not reliable given the error prone nature of the processes, and a coverage of 100 would be considered low compared to the average of 34,000 observed in our Seq control data set, suggesting an underlying problem with that genome position that has resulted in limited coverage.

This region overlaps with the extended signal detected in our RNA-Seq data, highlighting the importance of accurate representation of gene boundaries.

In current study, elongation factor 1 (ef1) was used as internal control, due to its stable expression in plant [ 68] and it also showed similar expression levels in all the tissues in our RNA seq data.

Only 20%% of the gene fusions detected in our DNA-Seq analysis were detectable in the RNA-Seq analysis of the same samples.

We attempted to find such genes in our RNA-Seq data as well as in publicly available RNA-Seq data.

To do so, we compared the differential H3K9me2 peaks detected in our ChIP-seq experiments with differentially expressed genes detected in our mRNA-seq experiments by calculating the correlation coefficients between data sets (see the section Materials and Methods).

To obtain insights into the expression of the newly identified genes and the antisense and sense transcripts, the expression patterns were analyzed in our RNA-Seq data as well as the publicly available sorghum RNA-Seq data in this study.

Notably, most reported AICD-regulated genes were also found in our ChIP-seq data, representing robust controls for verifying the reliability of our ChIP-seq data (Supplementary Table S3).

Moreover, as we included biological replicates in our dRNA-seq approach and incorporated a statistical method that is ideally suited to the analysis of dRNA-seq data, we are confident that our analyses are not dominated by false positives.

Fifty genes overlapped between those up-regulated according to RNA-seq in E12.5 SMG and the putative Sox9 target genes located around the top 500 Sox9 peaks in our ChIP-seq analysis (Fig. 1g).

Another pathway for which we observed broad regulatory changes in our RNA-SEQ data was the ErbB pathway.