Sentence examples for in one alignment from inspiring English sources

RDC-ANALYTIC is a suite of programs for high-quality protein backbone fold determination from residual dipolar couplings (RDCs) (only two RDCs per residue are required) in one alignment medium, and a sparse set of nuclear Overhauser effect (NOE) data.

Recently, we have developed a suite of algorithms, called POOl, for computing high-quality loop conformations using only a minimal amount of RDC data measured in one alignment medium.

However, in one alignment, codons are conserved (same codons occur in the same column), while in the other alignment codons appear only once in a column.

The number of differences when a sequence of words is treated as a single name in one alignment and a modifier and a name in another alignment could maybe have been fewer with a slightly modified study.

We have studied the effect of different rates of evolution between positions in one alignment, and verified that it is a major player in uncovering coevolution, and shown that, in this context, Mutual Information suffers from an "attraction" to quickly evolving sites that prevents it from becoming an effective coevolution detection measure.

In the assembly-versus-assembly alignment, we transverse each scaffold from 5' to 3' and record variants when mismatches, small insertions or deletions (indels) or other more complex forms of genome rearrangements are observed in one alignment block, or when breakpoints between two linear alignment blocks occur (Fig.  1a).

We then concatenated these three alignments into one alignment in the order in which these domains occur in BEL/Pao elements (protease, reverse transcriptase and integrase) [ 16].

Aligned reads for each tumor-germline pair were combined into one alignment file in binary sequence alignment (BAM) format [ 24], followed by local indel realignment and base quality recalibration using the Genome Analysis Tool Kit (GATK) software [ 14, 25].

In this case, we define the result to be the same as if there was one alignment in B on a different chromosome to any alignment in A. In this section, we compare the results of testing our method with those of other mapping tools that provide a paired-end option.

Five sequences that did not end up with other sequences bearing the same species annotation were additionally assigned to the alignments where sequences with the same species name were present; these five sequences were therefore found in more than one alignment.

We have evaluated the nine classes of splicing events in clusters in which at least one alignment assembly incorporates a FL-cDNA.