Sentence examples for in large alignments from inspiring English sources

Many of the latest methods for assembling phylogenomic datasets result in large alignments that consist either entirely or largely of non-protein coding DNA (e.g. introns and ultra-conserved elements (UCEs)) [ 51- 54].

Furthermore, according to Philippe et al. (2004), missing data in large alignments do not significantly affect inferred phylogeny when resolving relationships among eukaryotic groups.

Other models based on observed sequence variability in large alignments of homologous protein sequences, such as the BLOSUM family [5], have proven popular and successful.

It is known that in large alignments bootstrap replicates will all be very similar [ 30].

The speed, together with the mouse wheel zoom feature, makes it possible to get a quick overview and easily navigate in large alignments.

However, this finding is controversial and several other studies have argued that the basal position of ctenophores could be the result of long-branch attraction (LBA) or other artifacts stemming from noise present in large alignments [ 6, 7, 13].

RNAaliduplex is designed to facility the search for conserved RNA-RNA interaction sites in large alignment data sets.

While the instability demonstrated earlier is more apparent in larger alignments, it can also be present when smaller numbers of sequences are aligned.

This is representative of the trans-sialidases, who, as many of the surface antigen genes, are both divergent enough to be separated in the draft genome and to not be clustered in our analysis, and in some cases similar enough to not be assembled correctly and cluster in relatively large alignments.

> -wrap-foot> > -wrap-foot> Another important feature of AliView is the speed in rendering large alignments.

FastTree software can handle large alignments in a practical amount of time and memory.