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L2 lipids were very rare in lab dumps.
There was a major shift from group L2 lipids in lab gardens to group L1 lipids in lab dumps.
In total, 4 markers (13%) were found in greater amounts in field dumps than in lab dumps.
Again, as seen in lab dumps, field dumps were enriched for lipids indicating the presence of Gram-negative anaerobes (cy17∶0 and cy19∶0).
Of these, 8 (26%) markers were found in greater amounts in lab dumps than in field dumps: 3 Gram-negative markers; 10∶0-3OH, i15∶-3OH, and i17∶0-3OH i17∶0-3OHnding to EnterobacorrespondingXantoomonas-Pseudomonas, and Cytophaga-FlEnterobacter-Vibrioes, respectively.
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In general, lab dumps contained higher levels of markers indicative of both Gram-negative and Gram-positive bacteria.
In total, our analysis consisted of 62 samples from four major groups: i) lab gardens (LG, sampled in 2006 and 2008), ii) lab dumps (LD, sampled in 2006 and 2008), iii) field gardens (FG, sampled in 2008), and iv) field dumps (FD, sampled in 2008) (Table S1).
We analyzed 31 individual lipids across lab gardens, lab dumps, field gardens, and field dumps in order to determine which lipids were enriched between samples.
In addition, field dumps contained considerably richer communities than lab dumps and our results indicated the presence of a commonly-associated community across all samples, even though there was some affect of colony source on sample relatedness.
We calculated lipid richness for lab gardens, lab dumps, field gardens, and field dumps (Figure 2).
We found no difference in the amounts of saturated fatty acids and hydroxy fatty acids between lab gardens and lab dumps (Table 1).
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