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This hypothesis was supported by the approximate match in inferred time between the Tas1r1 pseudogenization and the dietary switch (Zhao, Yang, et al. 2010).
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The cosine similarity of the inferred time series is in better agreement than the more variable recall.
In aligning time samples based on the inferred time lags, we assume that the time-series data are not periodic.
Genes were categorised into four groups based on their presence/absence in different taxa (and hence on the inferred time period when the genes were transferred).
The inferred time evolution shows that the displacement began in July 2013 and that the displacement rate reaches its maximum (about 16 cm/year) during the summer period (from July to September 2013).
This ancestral human population lived somewhere in Africa, geneticists believe, and started to split up some time after 144,000 years ago, give or take 10,000 years, the inferred time at which both the mitochondrial and Y chromosome trees make their first branches.
Analysis of inferred establishment times was carried out by pairing real and inferred times, the inferred time of each mutant being paired with the closest time at which a haplotype in the simulated population bearing the inferred marker reached a threshold of q0.
Then we align the time samples based on the inferred time lags.
Then based on the inferred time delays, we align the time samples for each target gene.
Furthermore, divergence time estimates for the split of the two lineages (∼0.9 my) are slightly lower than generally inferred times for allopatric speciation in fishes (2.3 1.0 my, [69]).
In the presence of migration there are several interpretations for the divergence times in inferred species trees.
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