Sentence examples for in individual alignments from inspiring English sources

Scores based upon pairwise alignment percent identity scores in individual alignments.

Sequence length in individual alignments, but not sequence divergence, was found to correlate with the generation of branches that correspond to the concatenated tree.

The %chSp was calculated by normalizing the number of residues in the ortholog sequence that occur only once in individual alignment columns [ 4].

To accomplish this, separate alignments are aligned together while preserving the columns in the individual alignments.

Results from this evaluation are shown in Figure 4, and individual alignments are included in the supplementary website.

For practical purposes, the authors might think to add archives with all the individual alignments in single files and domain models in several formats such as the HMMR2, HMMER3, etc. ready made.

These results suggest that the individual alignments in this data set are reasonably strong phylogenetic markers.

Species relationships were inferred from these (filtered) concatenated alignments using a Maximum Likelihood (ML) approach as implemented in PhyML v3.0 [ 83], using JTT as evolutionary model, which was the best fitting model in the majority of individual alignments.

For the AT-exclusive alignments, seven alignment sets were generated, and 5, 10, 15, 20, 25, 30, and 50 bp inversions were included in the individual alignment sets.

Second, PhyloCSF also takes advantage of genome-wide training data to provide prior information about the branch lengths in the phylogenetic tree and the codon frequencies, rather than attempting to reestimate these a priori in each individual alignment.

The intra-genomic variation in GC content among the individual alignments reflects the isochore structure of the genome.