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Interestingly enough in a study of real Genome-wide data in ERF pedigree, GenGR-GC was consistently more powerful than pedigree-based GRAMMAR-GC (PedGR-GC), and the power advantage became more pronounced at higher heritabilities.
ERFs are linked to stress responses [31] and delays in ERF induction had been described in A. thaliana plants infected with virulent strains of the bacteria Pseudomonas syringae when compared with avirulent strains of the same bacteria [31].
We classified these genes in ERF group III.
These three motifs have been found in ERF, DREB, AP2, and RAV subfamily (Fig. 3).
The motif 16 containing a unique 'EDLL' residue was the group B3 specific in ERF subfamily (see Additional file 8D).
Genotyping in ERF was performed using Illumina 318/370 K, Affymetrix 250 K, and Illumina 6 K micro-arrays.
Similar(49)
In the ERF subfamily, a shorter conserved motif was observed in ERF-B2, B3, B5 and B6 than in the remaining ERF group (50 amino acids).
The results indeed demonstrate classic differences in the N2 and P3 waves in ERPs, and the corresponding events in ERFs.
The conserved Ala-37 (corresponding to A182 in this paper) in the ERF domain has been suggested to play a major role in the stability of the ERF domain or DNA binding with the DRE element or GCC box [ 56, 59].
A feature common to both woody species Vitis vinifera and Populus trichocarpa is the lower number of genes in group I in the ERF family and the higher number in groups V and IX.
There are 58 genes in the ERF subfamily, 33 genes in the DREB subfamily, 21 genes in the AP2 subfamily, 3 genes in the RAV subfamily, and 1 gene in the Soloist subfamily.
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