Dollo character coding corresponds to a model in which each derived state is allowed to originate only once during evolution, and all homoplasy takes the form of reversals to the ancestral condition (Swofford and Begle 1993).
We examined the expression of GFP in 4 mice, each derived from an independent microinjected oocyte.
We estimated SNP diversity and distribution parameters in 6,459 contigs each derived from sequences of at least two cDNA clones with the PolyBayes software.
This process is repeated on each derived subset in a recursive manner called recursive partitioning.
The IRMS analysis also provided the changes in the relative amount of S in excess in each sample derived from the tracer fed to the plant as described previously by Dubousset et al.[ 3].
In order to quantify this response, a regression analysis of flowering time over the generation of selection (3) was performed separately in each population derived from each line.
In order to identify the methylation pattern at the pronuclear stage, we indirectly compared the methylation profile of Igf2/H19 DMR3 in each zygote derived by in vitro fertilization, parthenogenesis, and androgenesis.
(TIFF 2076 kb) Additional file 3: The rich factors and number of genes involved in each pathway derived from a comparison of gene expression in TBvsTL, OTBvsOTL, TBvsOTB and TL2vsOTL2.
Mass spectra were processed using the Data Analysis v3.4 software (Billerica, MA, USA) and, in some cases, internally mass calibrated using identified peptide ions in each spectrum derived from the viral proteins or tryptic autolysis products.
These MOTU were annotated using Taxonerator, based on the curated SILVA dataset of annotated eukaryotic nSSU genes [24], revealing that the majority of MOTU in each dataset derived from phylum Nematoda (plotted for 4 base MOTU in Figure 4B).
