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Given the fact that the B4GAT1 and the LARGE glycosytransferase add GlcA in different linkages to α-xylose, this is an intriguing possibility.
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When testing for sex-specific differences in recombination rates in different linkage groups and over the total autosomal map, we found evidence for statistically significant distortions towards reduced male recombination fractions only in two autosomal LGs, rather than in each of the nine autosomal LGs.
These skewed markers were distributed in different linkage groups for each parent.
In B. napus, the orthologs of FAD2 and FAD3 were mapped in different linkage groups of the genome.
The few outlier loci identified by the Bayesian method were located in different linkage groups in the R. Burrishoole and R. Saint John salmon comparisons.
Only a few loci showed footprints of selection, and these loci were located in different linkage groups among the different wild population/hatchery strain comparisons.
There are two peak markers for this locus, located ~102 kb apart and residing in different linkage disequilibrium blocks (Additional file 1 Figure S3).
Markers in different linkage groups were used to carry out maximum likelihood calculations to estimate breakage probabilities and distances between markers using another program RHMAXLIK.
Similar results were observed by Garcia-Lor et al. [ 28] for SSRs and InDel markers with significant LD for loci situated in different linkage groups.
In four cases, there were inconsistencies in the linkage group assignments of SNP markers, which could be attributed to paralogy rather than to alternative splice events, as they were found in different linkage groups.
BnaFAD2 loci were mapped in linkage groups A1, A5, C1 and C5 [ 28], and BnaFAD2 located in different linkage groups was found to be responsible for the high C18 1 level [ 29] and erucic acid content [ 9].
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