The loader functions of JBioWH were designed to preserve the biological data so that the loader process stops in case of errors in the database format or structure.
Professor Long gave the judge dozens of pages of recent I.R.S. documents showing that instead of providing data in electronic database format as the court ordered, it released some in Microsoft Word and printed out other data on paper that was mailed, unsorted, in boxes with gaps in sequentially numbered pages.
As well as storing these models (e.g. as SBML or CellML [ 2461]) in a file format, it is also convenient to store them in a database format, such as the B-net database developed by Mendes and colleagues [ 118, 2462].
"We send them all the data in some database format, and they plug that into their software package and then they type in the code and press 'Enter,' " Bahcall said.
Downloading the data should be possible in a database format and iterative refinement will be performed by a consensus committee.
A second nifH sequence collection is available from the Zehr research group (http://pmc.ucsc.edu/∼wwwzehr/research/database/) in ARB database format.
The FunGene sequence compilations are not in ARB database format, and these data are not incorporated into a phylogenetic context and lack sequence-associated metadata.
The database may be downloaded in ARB database format at (http://www.css.cornell.edu/faculty/buckley/nifH_database_2012.arb), and a flat text version of the database that contains only aligned nifH sequences is also available (http://www.css.cornell.edu/faculty/buckley/nifH_database_2012.fasta).edu/faculty/buckley/nifH_database_2012.fasta
This paper describes four programs for Windows, designed to obtain the thermodynamic properties of aqueous species from experimental data and reporting them in the Unitherm database format (HCh software package).
Results are presented in a comprehensive database format.
In conjunction with performing similarity searches by BLAST, FunnyBase includes locally parsed representations of public databases such as SWISS-PROT in a relational database format.
