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This figure is generated in COOT.
The HEAT repeat domain of Raptor was built manually in COOT (Emsley et al., 2010).
The model was built in COOT (Emsley and Cowtan, 2004) and refined with PHENIX (Adams et al., 2010).
The model was further rebuilt in COOT (Emsley and Cowtan, 2004) and refined in PHENIX (Adams et al., 2002).
Water molecules were picked both manually and using the relevant routines in Coot.
Refinement was performed using multiple rounds of PHENIX [63] alternated by model re-building in COOT.
The initial model was further built and improved manually in Coot [20] and subsequently subjected to iterative steps of refinement in Phenix [21] and manual model building in Coot.
Refinement was carried out in Refmac [26], making use of TLS parameters [27], [28], and model building in Coot [29].
Refinement was carried out with the phenix.refine module in conjunction with iterative manual model building in COOT [71].
bAs defined in Coot.
Ordered solvent was added in Coot.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com