In contrast, alignments in RD9 show that Agy99 cannot have one of the ancestral haplotypes as an ancestor since it has maintained stretches that were deleted in either of them.
In contrast, alignment overextension occurs most often when closely related sequences are aligned, and thus becomes more frequent as sequence databases grow.
In contrast, alignment-free protein classification methods overcome these problems.
In contrast, alignment of M. lucifugus sequence for IKZF1, LAMC3, SOX9, and SOX8 to other mammals is more conserved.
In contrast, alignment with ARPAnno gave the best score for ARP2 (29.1), but the score for ARP4 is just slightly lower (28.8), just as the score for actin (27.0).
In contrast, alignment of the spacers from strains originating from different lineages, even where they contain the same repeat number, detected high levels of variation in these sequences between distinct CC's.
In contrast, alignment of reads to the reference transcriptome results in 10% fewer correct assignments—only 13,250 of 15,027 total calls are correct and most incorrect assignments result in false positive eQTL.
In contrast, alignment of the 15 unique class II pilins we identified demonstrates that variation occurs over the entire C-terminal domain and only six different D-regions are encoded.
In contrast alignment of ST6 versus ST7 strains revealed a mosaic pattern of regions of low polymorphism (0.1-0.2 0.1-0.2 1000 nt) interrupted by SNPeral regions of higher perymorphism (5-1000nt per 1000 nt on average) that were probably gainterruptedombynation with diseveral regions GBS strains, as previofsly suggested [ 33].
In the spirit of creative fragmentation, why not take advantage of the chance alignment of unrelated recordings to traverse the "Ring" (three-fourths of it, anyway) in contrasting readings, all live, all unfamiliar?
In contrast, DRA alignments showed notably lower levels of nucleotide variation (Additional file 3).
