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The Benjamini-Hochberg method was used to control false discovery rate (FDR) in comparison analysis between microarray data sets with an adjusted p value cutoff of 0.01 [23].
In comparison, analysis of the metastasis profiles defined 39 MCRs comprising 24 amplifications with a median size of 0.78 Mb (range 0.046 1.59 Mb) containing a total of 276 known genes, and 15 deletions with a median size of 0.53 Mb (range 0.035 1.7 Mb) encompassing 78 genes (Table 1).
In comparison, analysis using the MIA-TF method provided sensitive and reliable detection of the activity of TFs.
In comparison analysis of different methods we always use detrended signals as input signals to 1) minimize boundary artifacts and 2) ensure equal conditions for all considered methods.
In comparison, analysis using AI in SnipSnip took between 1 second and 2.5 min per chromosome and generated a mere 105 MB of output files.
Test power was estimated using G*Power 3.0 [ 28] at the significant level of 0.05 (α = 0.05) and the effect size of 0.3 for all statistical tests, and Bonferroni correction was applied for multiple tests in comparison analysis.
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RT-PCR analysis performed in comparison with placental-derived mesenchymal stem cells, confirmed the phenotypic analysis.
In comparison to other linkage analysis programs, the most significant advantage of HH is its high computational efficiency.
In class comparison analysis, the data set consists of labeled specimens and each of them has a predefined class assignment.
However, we have not been able to use those tools in our comparison analysis due to source code and data unavailability.
Therefore, we included this variable in our comparison analysis of included and excluded participants.
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