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There are a large number of methods to identify covarying positions [12] in part because some methods work better on certain alignments than on others.
The positive changes in the teachers reinforce the proposition that Vietnamese CHC could foster the application of a social constructivist approach because it has certain alignments in characteristics with social constructivism, such as the tradition of learning together, the appreciation to peer learning, and the value to collectivity and solidarity (Hằng et al. 2015).
In alignment masking, certain alignment columns and input sequences are excluded from phylogenetic analysis.
It takes a certain alignment of political and geographical factors to give birth to a tradition like this one.
One result of our study is that anchor points can not only improve the biological quality of the output alignments but can in certain situations lead to alignments with significantly higher numerical scores.
The assembly of MEMS-based devines in certain applications requires alignment within tolerances better than ±1μm.
Due to ambiguous homologisation of certain nucleotide positions in the alignments we excluded parts of high variability which were mainly due to inserts in certain taxa from the alignments.
Although it is obviously necessary to use flexible alignments in certain circumstances, such as where functional motions have occurred, it seems prudent to use them only when it is known beforehand that their use is justified in a particular case, and manual supervision of the final results is advisable.
To improve the accuracy of the QSOX sequence logo, secondary structures were predicted using PSIPRED [ 28] and used to manually adjust the alignment in certain cases.
In certain cases, the CLUSTAL generated alignments were manually corrected.
She suggested a "backbone" strategy of bringing people already advanced in certain policies and strategies into alignment with the commissioners who created the plan.
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