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In both alignments, the third and fifth eigenpositions capture the similar and dissimilar between the Archaea and Microsporidia, respectively.
Entries found in both alignments represent reciprocal matches between A. thaliana and Aquilegia and were considered potential homologues [49] for the purpose of this study.
In both alignments, chloroplast genes were coded as missing for the holoparasites.
The alignments have to be of the same length and the positions in both alignments have to correspond.
The CHARGE_* alphabets very commonly yield the most significant p-values at (i, i + 4) in both alignments.
We considered genes as 'significantly heterochronic' if they showed shift at P < 0.05 in both alignments (Fig. S12, Table S2).
Similar(44)
Current RNA-seq analysis pipelines handle the multiple-alignment problem in both the alignment and assembly steps.
The results identify several statistically significant fragments in both the ORF alignments and the genomic sequence alignments (Table 1).
Clustering (i.e., grouping of similarly expressed genes) plays a key role in the prediction of cis-motif elements in both alignment and enumerative methods.
The algorithm can be run in both alignment-free or alignment-based mode.
We calculated the average relative score for each group in both alignment modes.
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CEO of Professional Science Editing for Scientists @ prosciediting.com