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We therefore assume that these compounds bind in a similar manner as compound 11 in binding mode three.
Further, we have described the difference in binding mode of the carboxylic-acid-based agonist 1 and acylsulfonamide 3d.
The great difference in binding mode between PA and the iron substrate makes PA act as either a corrosion inhibitor or a film former under different conditions.
Ultimately, two independent structural modifications led to a similar shift in binding mode that when combined led to a synergistic improvement in potency and the identification of inhibitors with sub-micromolar HCV NS5B binding potency.
Recent developments in the direction of target-class-specific scoring methods and machine-learning-based procedures reveal significant performance improvement in binding mode and affinity prediction.
Recent developments in the direction of target-class-specific scoring methods and machine-learning-based classification models reveals a significant improvement in binding mode and activity prediction [1].
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The observed variability in binding modes justifies expectations for structural design of improved antibiotic properties.
The differences in binding modes of the identified inhibitors in the active sites of Cdc25A and B are addressed in detail.
(b) Involvement of residues K86, F89, N93, F181, L185, Y244, N247, and L251 in binding modes of quinine in the representative poses obtained with PELE simulations: the cell is colored in blue if the residue is found to interact with the ligand and in red if there is no interaction.
Additionally, to evaluate the differences in binding modes of these enantiomers, docking and molecular dynamics (MD) simulations of S-omeprazole (S-OME) and R-omeprazole (R-OME) in CYP17A1, CYP19A1 and CYP21A2 were carried out.
A smaller radius gives a tighter, more selective filter, whereas a larger radius can capture some flexibility of ligands within the binding site or account for some variability in binding modes.
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