Sentence examples similar to in approximate alignment from inspiring English sources

Although the NW algorithm represents the gold standard for accuracy, it is computationally intensive compared to approximate alignment methods.

This is an important result as it shows the necessity of approximate alignment algorithms.

Second, when a fingerprint "bit" was in common between two conformers, the retained alignments to the reference shape were used to yield an (approximate) alignment between the conformers.

A second stage fine alignment is then used to accurately register the scans from the first approximate alignment.

Once approximate alignment parameters are determined and manually verified (based on known values for the MT lattice), local refinement and CTF correction is performed in Frealign (Grigorieff, 2007).

Although it is argued in some studies [ 19] that exact matching would be enough for short read alignment, an approximate alignment of a queried pattern would help on reducing the total number of required reads (coverage) for whole sequencing.

Approximate alignment positions of mapped reads were estimated using the position of the spaced 20-mers, and all 60-mers existing in the read were stored in a hash table used by the de-novo assembler.

Hash tables are used in the series of FASTA programs [ 1], which calculate approximate alignments in shorter times than dynamic programming can.

These pairs are identified using megablast, which, since it uses approximate alignments, is rapid even for large datasets.

Hence, several network alignment heuristics (i.e. approximate aligners) have been proposed.

In the section, we describe the RAF inference engine for fast approximate simultaneous alignment and consensus folding for pairs of sequences.