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For a vertex u ∈ V i and every other V j, an edge has to connect u to some v ∈ V j in any alignment.
Since the number of mismatches are at most d, at least b − d blocks match exactly with their counterparts in s j in any alignment.
Because recombination might yield false-positive results when testing for selection (Anisimova et al. 2003), we first screened the alignments for evidence of recombination using GARD (Kosakovsky Pond et al. 2006); this analysis underscored no recombination breakpoint in any alignment.
Gblocks Version 0.91b [ 60] was used for eliminating gapped and too divergent portions of the datasets 2 and 3 with a minimum block length of 4 positions and gaps allowed in any alignment position for no more than half of the sequences.
Similar(56)
In detail, any alignment covering a region of the query or target sequence that overlapped with five or more other competing alignments in that region was removed if this depth threshold was exceeded greater than 20% or more of the alignment length.
In this case, we define the result to be the same as if there was one alignment in B on a different chromosome to any alignment in A. In this section, we compare the results of testing our method with those of other mapping tools that provide a paired-end option.
Two gene families were merged into one if any one gene in a given family would meet the similarity criterion in an alignment against any member of another gene family [71], [72].
The combined phred-like score is the sum of all phred scores from each EST that contributes to X at Y. A discrepancy was defined as any mismatch in an alignment.
Therefore, for any alignment in group (c), and in particular for such an alignment A of minimum cost, we have that (u, u′) ∈ A.
It was measured only on the alignment columns that were generated from non-repeat states in the simulation, as the SFF model does not give any alignment in repeat regions.
Information can be shared, but there may not be any alignment in terms of incentives, objectives, and decisions, as is required for coordination.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com