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Normalized hybridization values were used in all subsequent analysis.
The data were fit using a robust linear regression model (rim function from R statistical package), and then the residuals with respect to the model fit were carried forward in all subsequent analysis.
We observed that the optimal set size was 360 probesets, and we used this set to distinguish between different immune cell subsets and activation states in all subsequent analysis of blood samples.
We used spells of activity in all subsequent analysis.
This number of clusters is used in all subsequent analysis.
Means of the morning and evening readings will be used in all subsequent analysis.
Similar(39)
These individuals significantly skewed the average number of CNVs in the population (Additional file 1: Table S1) and were therefore removed from further consideration, yielding a cohort of 97 individuals in whom all subsequent analysis was conducted.
This analysis yielded the working dataset of genome-aligned reads presented in Table 1 and all subsequent analysis is based on this dataset unless otherwise noted.
Log2-transformed data was used for all subsequent analysis in the present study.
Only 219 of the 277 genes with lower expression in the double mutant and 53 of the 72 genes with higher expression are found in the microarray expression data and all subsequent analysis was done using these smaller datasets.
In a subsequent analysis of all reported free and bound Lewis system carbohydrates (Lea, Leb, Lex and Ley), we confirmed the overall structural similarity and rigid nature of these carbohydrate antigens [26].
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