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Putative PFAM TF identified in the 2nd oligo set were in addition to those annotated by gene ontology.
The Ensembl method does not provide a complete gene set for each species, as it has been demonstrated by genome annotation with different methods that have been able to identify many genes in addition to those annotated by the Ensembl automated pipeline, e.g. 700 chicken genes in addition to the Ensembl gene list [ 29] and more than 1,000 additional genes between mouse and human genome [ 30].
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In addition to these annotated genes, we also detected an important pool of unknown, specific and highly expressed genes that represent valuable targets for the study of A. pompejana adaptation.
A second microarray design features these experimentally derived promoter regions in addition to currently annotated 5' ends of genes.
In addition to previously annotated genes, we detected 55 previously unannotated gene orthologs in the pig based on blast analysis against the human, cow, and sheep genomes.
In addition to the 27 annotated TvLF genes, 7 previously un-annotated TvLF ORFs were identified by sequence comparison.
In addition to the already annotated protein-coding genes, the fact is emerging that millions of the non-coding RNAs (ncRNAs) are transcribed from the intergenic or the intragenic regions (Jiang, 2015; Wendel et al., 2016).
In addition to the 22 annotated sequences for PL10, DDX3X and DDX3Y, we identified 15 putativeative homologous regions (coverage > 50%) in the genomes of mammals (Table 1).
Two genomic DNA regions containing SERK-like sequences and seven TCs or ESTs were identified in addition to the already annotated MtSERK1.
In addition to annotating the strains, users have an option to contribute their novel variations to the database by entering necessary details for submission on a submit page.
In addition to annotating the full complement of CYP genes, we analyzed the expression of 88 CYP genes over the course of development in zebrafish.
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