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In addition to this, normalized expression data in macrophages after 24 h of stimulation were obtained in our core facility, using a mouse microarray platform (Agilent-014868 Whole Mouse Genome Microarray 4 × 44K G4122F).
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In addition to this region-based analysis, we computed separate normalized measures of contralateral preference and topography (see figure S3).
In addition to this the maximum r.m.s.
In addition to comparing normalized expression values across the two panels, we also evaluated the agreement with respect to fold change estimates of HER2+ versus HER2- expression at the gene level.
Specifically, texture is described by Gabor filter responses in addition to normalized gray values in order to cope with illumination changes.
As aforementioned, in addition to normalized counts, we also consider maximum-based filters for RPKM values, which we refer to as a RPKM maximum filter.
In addition to normalized counts, we also consider mean-based filters for the RPKM (Mortazavi et al., 2008) measure, which was initially proposed to simultaneously normalize RNA-seq data for biases due to library size and gene length.
In addition to theoretical analysis on normalized mean squared error (NMSE) performance of DIME, computer simulations over realistic nonsample spaced channels also showed that the DIME is robust for intersymbol interference (ISI) channels and fast time-invariant channels where a minimum mean squared error (MMSE) estimator does not work well.
In addition to values of relative normalized expression the cycle of quantification (Cq) for each PCR amplicon is indicated (Cq presents the cycle number at which the amount of amplified PCR amplicon reaches the threshold level).
In addition to measuring wall thickness, a normalized wall index was calculated (100* diameter lumen divided by the sum of anterior and posterior wall thickness)) to get a better quantitative impression about the degree of positive remodeling.
In addition to the comparison of the normalized likelihood in the standard Q-learning and Bayesian Q-learning models, we further tested the roles of uncertainty in the action modulation and learning rate.
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