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We inferred haplotypes within local haplotype blocks defined by the confidence interval method, and within longer regions of linkage disequilibrium bounded by defined recombination hot spots, and in addition inferred the defined haplotypes E-1, S-1, L-1 and F-1, some of which extend beyond defined blocks (15, 23).
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In addition, inferring structural variations from RNA-Seq data as opposed to DNA sequencing would be more complicated due to the presence of alternative splicing.
Interest in snake mitogenomics has focused on topics as diverse as gene duplications, truncations and order rearrangements [ 1- 4] Fig. 1], attempts to resolve the contentious phylogenetic relationships of the major snake lineages [ 5] and references therein] and, in addition, inferring patterns and understanding processes of genome functionality and metabolic protein evolution [ 3, 6].
In addition, we inferred positive population growth for most populations and detected evidence of historical gene flow between populations that are now physically isolated.
In addition, as inferred from the InSAR analysis, the NSDC catalog has a location uncertainty for the mainshock of about 30 km that its location occurred outside the InSAR frame, while the CMT and NEIC estimation agree well within about 4 and 6 km, respectively.
In addition, we inferred the indel dynamics parameters for nine HIV-1 coding genes.
In addition, and inferred by the magnitude of change (i.e., fold-changes), effects were more pronounced in fish containing lower flesh lipid levels.
In addition, we inferred phyletic distributions for the 53 previously predicted sRNAs and 10 new sRNAs reported by Raghavan et al. (2011).
In addition, we inferred the phylogeny of the surface glycoprotein, amastin, and generated a hybrid protein interactome to identify potential interactions between L. (L).
In addition, we inferred demographic dynamics for each of the three main lineages within the broadly distributed clade of the T. semitaeniatus complex (i.e., Clade C; see Results) using Gaussian Markov random field (GMRF) skyride method [ 69].
In addition, we inferred through simulation that the majority of the E. coli strains should have already lost the operon unless there is ongoing selective pressure to maintain it.
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