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Having extracted fragments of negative sequences from the database, there were two possible classifications in accordance with the alignment of the ATG with the TIS: in frame or out of frame.
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Sequences were aligned in accordance with the SILVA alignment [ 61, 65] and clustered into operational taxonomic units (OTUs).
The rRNAs were aligned with MAFFT (http://mafft.cbrc.jp/alignment/server/) using the Q-INS-i method [ 57], which has been shown to be more accurate than other programs because it optimizes the alignment in accordance with the secondary structures of rRNA.
Their locations were determined according to a stratified sampling design conceived in accordance with the geometric structure of the vineyard system, defined by the alignment of vine rows and the direction of the main slope.
This finding is in accordance with the proposed lack of activity of Ere(A) in azithromycin37.
As each slab solidifies and cools, the magnetic minerals in the new oceanic crust become magnetized in accordance with the prevailing orientation and alignment of the Earth's fluctuating magnetic field.
The patient studies were conducted in accordance with the ethical guidelines of the Declaration of Helsinki.
A few years ago we developed such a whole-genome-based, alignment-free, and parameter-free method [15,16], called CVTree in accordance with the name of the public domain web server CVTree [17,18].
The sequence alignment overlap and the E-value cut off can be preset in accordance with the goal of the experiment [21], [29].
In accordance with the definition of the SBM method, in Table 2 we see that all validated targets present in the input alignment are recovered in the scan output using a threshold of 1.
This is in accordance with the properties of other aquaporins17,40.
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