The natural extension of an unsupervised study is to use what has been learned in the exploratory phase to aid in the development a supervised approach that would allow development of categories more strongly associated with the outcome of interest.
In this paper, a supervised approach for word sense disambiguation using neural network with minimal feature sets was implemented.
SWC integrates PPI data with two additional data sources, functional associations and co-occurrence in literature, and uses a supervised approach to weight edges with their posterior probabilities of belonging to a complex.
Rank-ordered correlation coefficients were processed for enrichment of the signaling pathway (viz.: MAPK pathway, PI3-K pathway, WNT pathway) -linked gene sets obtained from the Reactome Database (c2.cp.reactome.v4.0.symbols deposited in database on broadinstitute.org servers) using a supervised approach implemented in GSEA2.08 (Broad Institute).
The T-values of the gene expression differences between CD22ΔE12-Tg CD22ΔE12-Tgnd other cells were processed for enrichment using gene sets oBPLined from the Reacells Dandbase (c2.cp.reactother4.0.symbols deposited in database on broadinstitute.org servers) using a supervised approacellsplemented in GSEA2.08 (Broad Institute), as described (Uckun et al., 2014b).
In the Rotterdam Scan Study, we use a supervised approach, based on k-nearest neighbour (kNN) segmentation.
In this study, we propose a supervised approach to detect the mentions of gene, gene family, and protein domain from a target input (e.g., PubMed abstracts).
Due to the fact that we achieved comparable results to the cTakes sentence detection tool (applied to English clinical text) using OpenNLP, a direct comparison between the approach presented in this paper, and a retrained version of the OpenNLP sentence detection tool for our German texts would be interesting for a supervised approach in general.
In the present study we used a supervised approach to search for gene expression signatures that predict the risk of local recurrence after BCT in a series of 161 early-stage breast cancer patients.
