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We provide a case-cohort approach and show that a full competing risk analysis is feasible even in a reduced data set.
This resulted in a reduced data set of 92 sequences.
A separate strategy for configuring the X data matrix was adapted that ungrouped the individual nitro- and oxy-PAHs known to be direct mutagens and used them in a reduced data set of 23 variables (Table 3).
The Branch-site LRT for positive selection [ 16] was applied four times, with different branches set as the foreground partition: (1) the RH2aα post-duplication branch; (2) the RH2aβ post-duplication branch; (3) both post-duplication branches, combined; and (4) the branch joining the paralogous clades in a reduced data set for which outgroup sequences were excluded.
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Because of computational limitations, the Bayesian method [74] was conducted on a reduced data set (25 exemplar sequences representing all major clades in the BI phylogeny) using the program MRBAYES.
Unlinked concatenated gene analysis on a reduced data set (n = 3+ individuals per species) was analyzed in the same way, as in [29].
Even for such a reduced data set, computational limits started to be observed (table 2).
'*BEAST' represents a reduced data set encompassing both species and the outgroup (Cheirogaleus major).
If the participants prefer they can opt to provide a reduced data set using a post pack.
PCA essentially replaces the natural, albeit potentially subjective pattern recognition ability of the human brain by reducing the highly complex chromatogram data into a reduced data set, where each chromatogram is represented by a single point, which is then plotted in the so-called scores plot in relation to the first 2 principal components of the entire data set.
This was not due simply to the higher allele number, since a reduced data set of 80 SSRs with 1694 alleles (the same number as the SNP data set) resulted in the same percent assignment as the full data set (data not shown).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com