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Then the server searches the index via SearchIndex, and eventually sends back the matched files in a ranked sequence according to the total relevance scores.
In the end, the server sends back the matched files in a ranked sequence, or sends top-k most relevant files if the user provides the optional value k. .
The key assumption implemented within SBSE is that both 'direct' miRNA down-regulatory events and siRNA off-target interference can be accurately assessed via estimates of 'seed' motif enrichment in a ranked sequence population.
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The curve obtained by plotting the precision at every position in the ranked sequence of items as a function of recall is called the precision-recall curve.
They progressed through their careers by acquiring titles in complex ranked sequences that were manipulated by kings throughout the 5th and 6th dynasties.
The key assumption implemented in SBSE is that both direct regulation of transcription by miRNA, and siRNA off-target interference, can be estimated using the differential distribution of an RNAi sequence (seed) motif in a ranked 3' untranslated region (3' UTR) sequence repository.
We used a non-parametric statistical framework for scoring and ranking oligonucleotide words based on their overrepresentation in a ranked list of sequences.
For the word analysis we used a non-parametric statistical framework for scoring and ranking oligonucleotide words based on their overrepresentation in a ranked list of sequences as previously described [ 34].
We chose the highest ranked sequences from the round 5 pools that were also highly ranked in round 3.
Sylamer [9] is another software package that identifies overrepresented occurrences of sequences in a ranked list of genes using the hypergeometric p-value distribution.
DRIMust [ 8- 10] searches for sequence motifs that are enriched, in a statistically significant manner, in the top of a ranked list of sequences, which can be produced by techniques like ChIP-Seq.
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