Sentence examples for in a pathway map from inspiring English sources
However, despite being unable to place these metabolites in a pathway map, unknowns are still indicative of the genetic diversity between genotypes and their contrasting stress responses.
Therefore a set of reactions in a pathway map was transformed into a unique network.
Nevertheless, it was shown that the proposed method worked well to some extent even when all reactions in a pathway map are not known.
A number of different query types are available in AlgaePath, and the transcript abundance data under different conditions are displayed simultaneously in a pathway map.
We randomly selected an initial substrate (in the above case, exceptionally, both A and B) in a pathway map, and tried to connect it to the same compound in another pathway map, regardless of the dead end material.
AlgaePath can be used to identify transcript abundance profiles and to compare variations among different conditions in a pathway map through five query functions (Gene Search, Pathway Search, Differentially Expressed Genes (DEGs) Search, Gene Group Analysis, and Co-expression Analysis).
Since the total number of genes assigned to a pathway map depends on the genome (organism), we defined the ortholog fraction (OF) of pathway map i as, where N i, orth is the number of orthologous genes detected in pathway map i using a given triplet, and Na i, min is the minimum total-number of genes appearing in pathway map i of the three genomes.
We assumed that if all the initial substrates of a pathway map were provided, then all of the reactions would take place there, and all products in the pathway map synthesized.
To search for a possible relation to RA, we performed a pathway mapping analysis in Metacore™ on genes which were negatively correlated with RAI1 (R < -0.60, 460 genes).
Attendees will benefit from a rich conversation about what outcomes are meaningful for their audience(s), and their comments/insights will be used in the ongoing development of a "Pathways Map" tool and "Outcomes List" that this national project is developing.
Supplementary Figure S1 in supporting information shows the distribution of mutual information between pairs of phylogenetic profiles of COGs corresponding to enzymes that are connected via a compound in a KEGG pathway map (Kanehisa and Goto, 2000; Ogata et al., 1999), compared to those of randomly selected COG pairs.
