Sentence examples for in a given alignment from inspiring English sources

GENECONV is a computational program for statistically detecting high-scoring aligned pairs in a given alignment [ 28].

In this context, it can further be stated that "saturation" is not an inherent character of an aligned sequence position in a given alignment, it rather depends on the considered phylogenetic level.

The lengths of alignments were also trimmed so all sequences in a given alignment were the same length.

K is the number of sites in a given alignment.

For standard BWA settings, the maximum edit distance allowed in a given alignment is controlled dynamically according to read length.

If proposed clades are weakly supported, the conclusion is that evidence for this clade is poor or lacking in a given alignment.

This could probably be because our program does not discriminate between the nature of amino acid present in DHA1 and SP families at a given alignment position.

Our results (Fig. 1) show that, in any given alignment, a significant fraction of the inserted gaps (30 80%) are placed at incorrect positions.

Total, unique and duplicate reads Mapped reads and mapped unique reads rRNA reads: counted in one of two modes: (i) interval mode where an interval file defines the location in the given alignment to which rRNA reads map; and (ii) BWA mode, where an independent Burrows–Wheeler Aligner (Li and Durbin, 2009 ) alignment to reference rRNA sequences is performed.

This program uses a statistically optimized window size to detect selective constraints in specific codon regions of the given alignment at a particular branch of the phylogenetic tree that show the evolutionary history of the sequences under study [ 68].

The knowledge of even one 3D protein structure in a given sequence alignment provides a powerful means to test the correctness of the whole alignment.