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However, the statistical model had low statistical power for a QTN that was in a different linkage phase from Labrador retrievers which comprised ∼50% of the individuals.
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When testing for sex-specific differences in recombination rates in different linkage groups and over the total autosomal map, we found evidence for statistically significant distortions towards reduced male recombination fractions only in two autosomal LGs, rather than in each of the nine autosomal LGs.
Indeed, in a previous study, different linkage signals were found for parent and teacher ratings of a quantitative assessment of autistic behaviors in ASD families (Duvall et al. 2007).
Another issue that has also been observed in other fields is that genetic association data tend to be very population specific, partly because the tagging SNPs are often in different linkage disequilibrium blocks in different ethnic cohorts (for a review see [ 56]).
The few outlier loci identified by the Bayesian method were located in different linkage groups in the R. Burrishoole and R. Saint John salmon comparisons.
In multiple different linkage studies, many independent PC associated loci have been identified on separate chromosomes.
Only 3.4% (24) of the scaffolds were present in two different linkage groups (Additional file 5).
Among the 99 QTLs identified, 12 GY QTLs were detected in nine different linkage groups (Fig. 1).
Interestingly, the rs1005753 variant associated in our study and the rs2075696 variant are located in two different linkage disequilibrium blocks in the PADI2 gene locus.
Therefore, the selected individuals were tested for their species purity using eight microsatellite markers located in five different linkage groups [ 73].
The similarity between rose and apple is comparable to the above-mentioned situation in peach, in which TNLs and flanking genes are located in two different linkage groups (Additional file 3).
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