Sentence examples for imputed SNPs for from inspiring English sources

After SNP imputation, we included the imputed SNPs for the association study.

Individual genotypes are now available on almost 2 million measured and imputed SNPs for a subsample of TEDS.

The median genotype concordance r 2 for the 1,081,155 imputed SNPs for the European Geuvadis samples was r 2  = 0.92.

The Global BPgen consortium tested 2.5 million genotyped or imputed SNPs for association with systolic or diastolic blood pressure in 34,433 subjects of European ancestry [89] and identified eight regions with genome-wide significance.

Therefore, it is possible to devise a new customized SNP array that includes all of the selected SNPs consisting those of genotyped or imputed SNPs for the HLA-prediction model to increase the prediction accuracy.

Indeed, the HapMap imputed SNPs for the MEDIA study only cover 43.3%% of common SNPs in the 1000 Genomes ASW population at r ≥ 0.8, which partly explains the low number of genome-wide significant loci found in African Americans [ 26].

To do this, we calculated the probability of being on the same chromosome as the imputed SNP for the 20 SNPs in greatest LD with the imputed SNP. Figure 2 shows that for the SNP with the highest LD, there is a probability of 0.7 of being on the same chromosome and that this drops off to 0.31 for the 20th-ranked SNP.

There is no known method for effectively filtering the poorly imputed SNPs from the well imputed SNPs on different platforms.

PLINK (v1.07) (http://pngu.mgh.harvard.edu/~purcell/plink/) [ 32] was used for GWASs of genotyped SNPs in DCCT/EDIC, PLINK (v1.90alpha) in LifeLines, R (v2.15.2; www.r-project.org/) for imputed SNPs and for the generation of plots and calculation of genomic control lambda (GenABEL; www.genabel.org/).org/

After evidence for strong linkage in this region (125906 bp to 125960 bp) on chromosome 5, we conducted fine-mapping using experimentally and imputed SNPs genotypes for an average map density of less than 1 kb.

Compared to correlation between observed and imputed genotypes, percentage of correctly imputed SNPs does not account for the (low) MAF of imputed SNPs.