Sentence examples for improve the alignments from inspiring English sources

Our attempts to improve the alignments based on de novo prediction of folding for the novel ss-rRNAs also fell short, likely because most of the novel ss-rRNA sequences were fragments and the folding algorithms work best on complete sequences.

To enhance the resolution of the 2-dimensional separation and, thereby, improve the alignments of Western blots and silver-stained gels, we produced zoom gels with a pH range of 4.5 to 7, the region in the 2-dimensional gels that is most densely populated with protein spots.

BioEdit was used to manually improve the alignments and remove all gap-containing sites before the trees were created.

To significantly improve the alignments, the pair-wise alignment was performed with the gap opening penalty at 10 and the gap extension penalty left at default 0.1.

Corresponding nucleotide sequence alignments were then reexamined to improve the alignments based on these protein sequence alignments to avoid frame-shift errors in GeneDoc [ 44].

Rather than using threading in order to improve the alignments, they asked if the equivalent of threading potentials could be used to measure the relative accuracy of alternative MSAs.

To improve the alignment quality, the outgroups were removed, the sequences re-aligned, and a final tree built using the same methods with midpoint rooting.

All ITS sequences were aligned using Clustal W [ 77], with manual gap adjustments made to improve the alignment (see additional file 2, nexus.doc).

There are also new options to improve the alignment.

Additional fiducial points were added in those regions to improve the alignment.

By this way, it can not only skip the complex model of flexure angle, but also improve the alignment performance.