Distances can be through-space; angles need not be bond angles; torsions can be improper angles.
Defects of channeling, short circuiting and fluid re-entrainment are resulted from inefficient in-line HSM designs, such as those with large shear gap widths, large tip-to-base clearances, single rows of rotor and stator teeth, or improper angles of stator teeth.
Amber99 can be written as a linear combination of six terms E s = E bs + E ab + E it + E ta + E vdw + E cc, where E bs, E ab, E it and E ta are the bonded terms constraining bond lengths, bond angles, improper torsion angles and torsion angles, respectively.
To quantify this relative orientation, we measured an improper dihedral angle (Φij), defined by the hydroxyl oxygens (or sulfoxyl sulfur) and backbone carbons of two (not necessarily adjacent) residues, i and j.
A measure of this is shown in Figures 3B and 3D, where the improper dihedral angle (Φij) has been tabulated for various pairs of hydroxyl-containing residues along the peptide length during the course of the simulation for DBAD1 and Al-S1, respectively.
However, the improper selection of point angle leads to tool wear and produces poor surface finish.
Similar things happen to other components, such as angles, torsions and improper torsions.
More concretely, the force associated with the total internal energy, which is the sum of the individual energy contributions attributed to the bonded (bond, angle, dihedral angle, and improper planar deformation energies) and non-bonded (van der Waals, electrostatic, and EEF1 solvation energy) interactions, can be calculated for all the atoms in the protein throughout the unfolding trajectory.
Mr. Bernanke denied anything improper — including accusations that the Fed angled to delay public disclosure of Merrill's losses and to keep other regulators in the dark about post-merger bailout plans for BofA.
Conformational matching, involving ranges of distance, angle, and torsion measurements (including improper torsions), have also been of interest to Jmol users.
