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One source of ASE is imprinting, so we investigated whether genes previously found to be imprinted in mammals (humans, mice or cattle), extracted from the gene imprint database (http://www.geneimprint.com/site/home), showed extreme ASE in our data set.
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The list of imprinted genes was obtained from the Genomic Imprinting Database (http://www.geneimprint.com/).
The Imprinted Gene Database (www.geneimprint.com) lists four predicted imprinted genes on chromosome 5; however the regions do not directly overlap the location detected by our analysis.
ASE genes were compared to a list of known human (245) and porcine (30) imprinted genes downloaded from the imprinted gene database [ 66].
One of the criteria gene lists therefore contained all known imprinted genes, obtained from the imprinted gene catalogue [ 103] and the imprinted gene database [ 104].
The company has also built an aggregated, crowdsourced database of various malware imprints so that it can more effectively (and quickly) recognize existing threats and help companies squash them before they cause havoc.
There are 95 proven and 114 predicted imprinted genes in the human genome (Geneimprint database).
For the Geneimprint database we separately considered all predicted imprinted genes and the experimentally confirmed ones only.
59 out of the 98 known imprinted genes in mouse are in the mouse RefSeq database.
The maternally expressed imprinted gene PDE120 is annotated as a pigment defective embryo (pde) mutant in the SeedGenes database [ 64, 65].
Compared to their (non-imprinted) chicken orthologs, imprinted genes show similar sequence identities and Ka/Ks distributions as all genes in the HomoloGene database.
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