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Accurate analyses must address the critical issue that SNPs from GWA studies frequently implicate more than one gene (50% of GWAS Catalog SNPs, Supplementary Fig. S2).
While previous efforts to increase the number of gene or SSR anchor markers relied on using several crosses per species e.g. [ 41, 42, 73, 74], the ease of mapping large numbers of transcripts using SNPs relaxes the need to implicate more than one cross for increasing the number of mapped anchor markers.
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