We implemented the likelihood ratio test as an online tool (http://www.humangenomeprivacy.org/service.php) for participating teams to evaluate the privacy risks in their perturbed data.
Tests for linkage disequilibrium (LD) and Hardy Weinberg equilibrium (HWE) were performed using GENEPOP v 4.2 (Rousset 2008), implementing the log likelihood ratio statistic and probability test, respectively.
These Bayesian trees were used to implement the maximum likelihood methods of the PAML v.4.
To compare the evolutionary pattern of tarantulas spider KTTs with others, we implemented the "maximum likelihood method" [26] to estimate the nonsynonymous/synonymous mutation ratio for the three clades ( Table S2, S3 and S4 in Supplemental Materials).
Researchers have implemented the maximum likelihood estimation (MLE) method in two popular commercial statistical software packages.
Then, we compute the tree using the Dnaml tool from the PHYLIP [ 32] software package,b which implements the maximum likelihood method for aligned DNA sequences.
The nurse and psychology participants thought that if the intervention was to be integrated in the treatment of mental health conditions in a low income country, cutting down on expenses would increase the likelihood of implementing the intervention.
To increase the likelihood of implementing the programme, participants suggested that instead of many family members attending sessions, one member who was most supportive should attend the sessions to reduce travel expenses.
For data missing either at completely random or at random, we will use the Mplus modeling package to impute data by implementing the full information maximum likelihood algorithm.
Psychometric functions were fitted using the psignifit toolbox version 2.5.6 for Matlab (see http://bootstrap-software.org/psignifit/), which implements the maximum-likelihood method described by Wichmann and Hill [104].
