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R code is available for implementing the approaches of Li et al. [2009] and Chen et al. [2009].
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IsoDalton implements the approach of Snider [108].
To estimate the extent of purifying selection, we implement the approach of Loewe et al. (2006).
In addition, we implement the approach of Loewe et al. (2006) that also utilizes divergence data for estimating a model of purifying selection.
To identify tracts of IBD, we implemented the approach of Pool et al. (2012), but with slight modifications for the diploid genomes and for the large DPGP3 population sample (described below).
To estimate the fraction of amino acid mutations driven to fixation by positive selection and simultaneously coestimate a demographic model, we implemented the approach of Eyre-Walker and Keightley (2009).
The evaluation illustrates the key features of MATA while highlighting the benefits and challenges of implementing the approach.
developed the model, analyzed the data and wrote the paper; M.S.Z. and O.H. designed the experiment; O.H. and R.C. implemented the approach and studied properties of the model.
Use the stationary bootstrap to generate B resamples of the residuals ζ1,…, ζ T obtained in step 2. The stationary bootstrap is implemented using the approach of Politis and Romano (1994).
(2) A more explicit approach to explication and understanding of the causes for non-acceptance of evolution should support the often-stated goal of understanding "where students are" prior to implementing the kind of approaches frequently advocated for teaching evolution.
Despite the remaining practical challenges with regard to implementing the WoE approach, the importance of WoE will increase in the future of REACH, and beyond.
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