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For example, several methodology studies [ 44- 46] have implemented variants of the Expectation-Maximizing (EM) algorithm to simultaneous search for the unknown canonical patterns and the unknown mixing ratios in gene expression data.
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More specifically, the implemented variant of LLL algorithms with deep insertions is to replace steps S12 to S15 of Algorithm 1 with the following deep insertion process [35] in Algorithm 2. Pseudo-codes of the LLL algorithm with deep insertions.
A computational analysis and comparison using ANOVA indicates that improvements towards a better optimal solution can be gained by implementing variants of the simulated annealing algorithm.
In addition, little speed gains can be obtained by implementing variants of the simulated annealing algorithms that are coupled with other algorithmic concepts.
SVA also provides for flexible interaction with software implementing variant association tests allowing users to consider both the bioinformatic annotation of identified variants and the strength of their associations with studied traits.
The intended uses that distinguish this framework are: (1) gaining of insights into properties of search algorithms through a variety of means, (2) easy production of examples that can be used both for conference presentations and to teach heuristic search to students and (3) using policy-based design for building a taxonomy of implemented algorithmic variants.
Table 1 presents the implemented model variants as well as the data formats for each program, whereas Figure 1 illustrates example program calls together with their corresponding output.
Based on previous work in the field of spatial statistics [ 59], we implemented several variants of the weighted OD, the only difference being whether the weighting was taken into account before (WODb) or after (WODa) the nearest neighbors were computed.
We implemented a variant of the ECFP as described by Rogers and Hahn [5].
TCP-Reno has been the most widely implemented TCP variant [18, 19] which we study in this paper.
In this paper, we implemented a variant of the traditional variational approach and computed two sets of monthly gravity field solutions using the data from January 2005 to December 2006.
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