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The markers closest to the QTL position were then used as cofactors in MQM (or also known as Composite Interval Mapping) analysis, also implemented using the same software.
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Implementation: Gene expression analysis was implemented using the free software Bioconductor version 2.11.1.
The SVM was implemented using the publicly available software package PyML http://pyml.sourceforge.net).net
A prototype has been implemented using the AGG software tool.
Machine classification algorithms were implemented using the Weka software package (v3.6) [28].
This was implemented using the R software.
All classifiers were implemented using the Weka software package [ 70].
This procedure (ZO) is implemented using the StOCNET software package.
Quadratic regression fits were implemented using the SigmaPlot software package.
Linear programming is implemented using the GNU Linear Programming Kit software [ 55].
The GBLUP method was implemented using the gebv software described in [ 24].
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