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A genome comparative circular map was implemented using the program CGview [18].
To assess admixture in the Japanese Carcinus population, Bayesian model-based cluster analysis was implemented using the program STRUCTURE v.2.2 [65], which assigns individual genotypes to populations based on minimization of both Hardy Weinberg and linkage disequilibrium within those populations.
Several clustering methods (hierarchical, SOM, K-means and Terrain clustering) were implemented using the program Genesis.
ENMs were generated using a presence-only model implemented using the program Maxent [ 53].
Nested clade analysis was implemented using the program GeoDis version 2.2 [ 38] for the CYTB dataset using the inference key of Templeton [ 39].
All models were implemented using the program ASReml (Gilmour et al., 2002) and significance of additive genetic variance was assed via likelihood ratio test statistics (LRT).
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It is designed around object oriented paradigms and implemented using the programming languages C++ and Python.
The code is implemented using the programming language C++, and all the cases used for both training and testing are extracted from the electronic bridge database of the Kansas Department of Transportation.
The simulations have been implemented using the programming language Perl (www.perl.org).
The methodology has been implemented using the programming language Matlab® [ 4].
Software: The Chemical Translation Service (CTS) was implemented using the programming languages Groovy (v1.7) and Java (v6.20).
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