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In our EABM we implemented the expression of the rpoS gene by modeling the agents to spend less energy and stop cellular division under starvation conditions.
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An R-script that implements the expression is included.
We implemented the autoregulatory expression module in NIH3T3 cells using lentiviral gene transfer.
VB and VG implemented the cloning, expression and translation studies, and participated in the design of inserted cassettes.
BM and JH had implemented the mapping of expression data to pathways.
The steepest direction is implemented in the expression of the total energy functional E of the target system on the basis of the variational principle, without the constraints of orthogonality and normalization on the one-electron wave functions.
The data were normalized, background corrected, and summarised using the Robust Multichip Average (RMA) algorithm implemented in the Expression Console version 1.1.2 software (Affymetrix).
The data were normalised, background corrected and summarised using the Robust Multichip Average algorithm implemented in the Expression Console version 1.1.2 software (Affymetrix).
Signal estimates and normalisation for gene-level analysis were generated using the Probe Logarithmic Intensity Error Estimation (PLIER) algorithm implemented in the Expression Console software (Affymetrix).
Raw data were normalized by the robust multi-array average (RMA) algorithm implemented in the Expression File Creator module of the GenePattern genomic analysis platform (Reich et al., 2006).
where two translinear loops similar with the loop analyzed for the "X2" circuit implement the following expressions of ID 1 and ID 2 currents (derived from (19)): I D 1 = I 2 − I 1 + I O + I 1 + I O 2 4 I 2 (22).
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