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4.2 and already implemented in the genetic algorithm.
The representation and fitness evaluation were implemented in the genetic algorithm, with rank-based tournament selection for both crossover and replacement of population members.
The quantitative transmission disequilibrium test (QTDT) (Abecasis et al. 2000) implemented in the genetic analysis package SOLAR.
First, we employed the leave-one-out test implemented in the genetic stock identification program oncor (Kalinowski et al. 2007).
To construct evolutionary relationships among the isolates, the maximum-likelihood (ML) method was implemented in the Genetic Algorithm for Rapid Likelihood Inference (GARLI) software (Zwickl 2006b).
A genetic algorithm implemented in the "Genetic Algorithm and Direct Search Toolbox" of Matlab (the ga command) was then used to find the parameters which minimised the error function.
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Fig. 1 Pair-wise chromosomal mating as implemented in the proposed genetic algorithm-based sample selection.
Both aspects, risk assessment and co-existence, are implemented in the German Genetic Engineering Act (GenTG) [10].
This approach was implemented in the software Genetic Network Analyzer[ 114].
Cyanobacterial 16S rRNA gene sequences were retrieved from the SILVA database (http://www.arb-silva.de/) and aligned together with sequences retrieved from clones using MUSCLE as implemented in the Molecular Genetic Analysis (MEGA) software package version 5.0.
In order to establish the various clusters of orthologous groups (COGs) in relation to the accepted functional classification scheme of bZIP transcription factors [ 22, 24], the full-length CDS of putative orthologs and paralogs identified were used for phylogenetic reconstruction by Neighbor-Joining (NJ) method, implemented in the Molecular Evolutionary Genetic Analysis (MEGA) version 3.1 [ 52].
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