Currently, only a simple delay-optimal version of sequential integration is implemented in the commands if -s, without much effort to minimize the number of registers and the area of the resulting mapping.
The algorithm described above for calculating optimal superpositions with missing data is implemented in the command-line UNIX program THESEUS (Theobald and Wuttke, 2006a, b).
Many of the same analyses implemented in the command-line scripts are also accessible programmatically via a set of Python libraries to aid developers who wish to build their own tools upon ITEP's data structures.
Sequences were denoised using PyroNoise implemented in the mothur command shhh.flows.flows
FDRs were calculated using the Benjamini Hochberg method implemented in the p.adjust command.
Specifically, we first estimated the posterior distribution of possible orders using an MCMC approach [ 26] implemented in the mcmc command of carthagene.
To obtain a summary stratified IRR, we used a fixed-effects M-H type procedure as implemented in the "ir" command in STATA, which should give results similar to fitting a Poisson regression model with indicator variables for "study".
Next, all the remaining models are superposed onto the fitted model using rigid-body least-squares minimization, as implemented in the model.superpose command of MODELLER-9v7.
For each individual, these weighted allele counts were then summed over all SNPs passing the threshold and divided by the total number of summed SNPs to produce the polygenic score (as implemented in the PLINK "score" command) (Purcell et al. 2007).
In the final period of a dying government, realism means prioritising proposals that can be implemented in the next six months and might command cross-party support; and those that do not require legislation.
We assumed that data were missing at random given the results from the observed data, and we used chained equations (regression switching) with 50 sets of imputations to impute missing values as implemented in the STATA's ICE command.
