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One attempt by Brendel et al. used three variables for splice site prediction, and the model was implemented by the web server SplicePredictor (http://bioservices.usd.edu/splicepredictor/).edu/splicepredictor/
Both databases achieved a prediction accuracy of 71.8%, just below the prediction of psipred as implemented by the Phyre2 server (72.7%).
This was performed by using the Single-likelihood Ancestor Counting (SLAC) method implemented by the Datamonkey web server (www.datamonkey.org).org
The threshold p-value was 0.1, representing the default value for Single-likelihood Ancestor Counting (SLAC) analysis implemented by the Datamonkey web server.
Homology modeling was performed using the human representative sequence for the MPO family and the first approach mode implemented by the homology-modeling server, SWISS-MODEL [ 48].
We used the single-likely-ancestor counting method, SLAC [ 32], and GA-Branch method [ 36] implemented by the DataMonkey web server [ 37].
Following the MEGA analysis of selection, we used the HyPhy package as implemented by the Datamonkey adaptive evolutionary server (http://www.datamonkey.org).org
Modeling long-time scale protein fluctuations using coarse graining combined with Monte Carlo methods as implemented by the CABS-flex Web server suggests that the hI s5A loop may occasionally fold back on itself, allowing it to populate both less flexible and more flexible metastable states perhaps accounting for the large width of the 2Cys313 native spFRET peak (data not shown).
A three-dimensional model of the selected putative proteins was generated using the programs implemented by the automated protein homology-modeling server SWISS-MODEL (Swiss Institute of Bioinformatics [ 24]).
Suppose that AS and TGS (Ticket Granting Server) are implemented by the same physical entity, which simplifies protocol design.
Data exchange between clients and the application server of the SCADA system and remote server procedures call are implemented by the HTTPS and AMF (Adobe Media Format) protocols.
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