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The prediction server based on PGAC has been implemented at http://iclab.life.nctu.edu.tw/prolocgac.nctu.edu.tw/prolocgac
A web service is implemented at http://biohealth.snu.ac.kr/software/degpack for the analysis of multi-class data and it includes SAMseq and PoissonSeq methods in addition to the method described in this paper.
This study's conversion equations, implemented at http:/converteasy.org, may aid in the comparison of medication efficacy studies, in meta- and mega-analyses examining symptoms as moderator variables, and in retrospective combination of symptom data in multi-center data sharing projects that need to pool symptom rating data when such data are obtained using different scales.
Recent evolutionary relationships among the housekeeping gene sequences were analyzed using the eBURST algorithm implemented at http://eburst.mlst.net/[ 46].
Functional analyses were performed using Gene Ontology (GO) annotations [ 23], DAVID Bioinformatics Resources [ 24] and Gene Set Enrichment Analysis (GSEA) [ 25] as implemented at http://www.broadinstitute.org/gsea/, version 2.06.
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The GEBA (Genomic Encyclopedia of Bacteria and Archaea) project is one such 'community phylogenomics' initiative that is being implemented at the Joint Genome Institute (http://www.jgi.doe.gov/programs/GEBA/).gov/programs/GEBA/
Homology searches using the CWH amino acid sequence (gi|258507319; ref|YP_003170070.1) were performed using the BlastP algorithm implemented at the National Center for Biotechnology Information (http://blast.ncbi.nlm.nih.gov/Blast.cgi) against the curated, nonredundant "nr" database.
Neutrality was first tested with the McDonald-Kreitman test as implemented online at http://bioinf3.uab.cat/mkt/mkt.asp[ 49].
Splice site analysis was performed using the FSPLICE program implemented at the SoftBerry server (http://www.softberry.com/berry.phtml).phtml
Additional techniques for machine learning can be found as they are implemented at the WEKA package (http://www.cs.waikato.ac.nz/ml/weka/).waikato.ac.nz/ml/weka/
Both methods (FEL and MEME) [ 69- 71] were implemented at the Datamonkey website (http://www.datamonkey.org).org
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